<?xml version="1.0" encoding="UTF-8"?>
<geneomatic><graph>
<vertices>
<object class="java.util.HashMap">
<void method="put">
  <string>Vertex3</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>CLV2</string></void>
<void property="Description">
  <string>Extracellular leucine-rich repeat.</string></void>
<void property="Reference">
  <string>Haecker_Laux01</string></void>
<void property="Function">
  <string>Probably forms membrane-associated complex with CLV1.</string></void>
</object></void>
<void method="put">
  <string>Vertex6</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>intWUS</string></void>
</object></void>
<void method="put">
  <string>Vertex1</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>CDK2</string></void>
</object></void>
<void method="put">
  <string>Vertex4</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>CLV3</string></void>
<void property="Location">
  <string>dorsal</string></void>
<void property="Description">
  <string>CLAVATA pathway. Used as stem cell marker. Small polypeptide wit a putative secretory signal peptide.</string></void>
<void property="Reference">
  <string>Haecker_Laux01; Science,289:613-617</string></void>
<void property="Function">
  <string>Probably binds to the CLV1 at the membrane surface.</string></void>
<void property="Threshold">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex2</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>CLV1</string></void>
<void property="Description">
  <string>Expressed mainly L3, but possibly also in L2. Putative receptor serin-threonine kinase with an extracellular leucine-rich domain.</string></void>
<void property="Reference">
  <string>Meyerovitz_etal97;Haecker_Laux01</string></void>
</object></void>
<void method="put">
  <string>Vertex0</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>CDK1</string></void>
</object></void>
<void method="put">
  <string>Vertex5</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>DIV</string></void>
</object></void>
<void method="put">
  <string>Vertex7</string>
<object class="dkfz.cello.genet.BIC">
<void property="Name">
  <string>WUS</string></void>
<void property="Description">
  <string>Expressed in the Organizing Center (OC) cells. L3. Activity of WUS in OC promotes a signal that specifies the overlying nehgbours as stem cells.</string></void>
<void property="Reference">
  <string>Haecker_Laux01</string></void>
<void property="Internal">
  <int>2</int></void>
</object></void>
</object></vertices>
<edges>
<object class="java.util.HashMap">
<void method="put">
  <string>Vertex0, Vertex1</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CDK1-&gt;CDK2</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex4, Vertex7</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CLV3-&gt;WUS</string></void>
<void property="Description">
  <string>Delimit the Organizing Center by repression of WUS.</string></void>
<void property="Reference">
  <string>Haecker_Laux01</string></void>
<void property="Strength">
  <float>-1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex1, Vertex5</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CDK2-&gt;DIV</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex2, Vertex2</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CLV1-&gt;CLV1</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex7, Vertex6</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>WUS-&gt;intWUS</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex5, Vertex0</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>DIV-&gt;CDK1</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex7, Vertex4</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>WUS-&gt;CLV3</string></void>
<void property="Type">
  <string>Mediator of the induction not known.</string></void>
<void property="Description">
  <string>Overexpression of WUS induce expression of CLV3.</string></void>
<void property="Reference">
  <string>Haecker_Laux01</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex6, Vertex7</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>intWUS-&gt;WUS</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex4, Vertex6</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CLV3-&gt;intWUS</string></void>
<void property="Strength">
  <float>-1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex6, Vertex6</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>intWUS-&gt;intWUS</string></void>
<void property="Strength">
  <float>1.0</float></void>
</object></void>
<void method="put">
  <string>Vertex4, Vertex4</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CLV3-&gt;CLV3</string></void>
<void property="Strength">
  <float>2.0</float></void>
</object></void>
<void method="put">
  <string>Vertex3, Vertex2</string>
<object class="dkfz.cello.genet.Interaction">
<void property="Name">
  <string>CLV2-&gt;CLV1</string></void>
<void property="Type">
  <string>Membrane associated complex between CLV2 and CLV3.</string></void>
</object></void>
</object></edges>
<viewvertexinfo>
<object class="java.util.HashMap">
<void method="put">
  <string>Vertex3</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.8188277087033747</double></void>
<void property="y">
  <double>0.17717717717717718</double></void>
</object></void>
<void method="put">
  <string>Vertex6</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.30970149253731344</double></void>
<void property="y">
  <double>0.53125</double></void>
</object></void>
<void method="put">
  <string>Vertex1</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.15331807780320367</double></void>
<void property="y">
  <double>0.31877729257641924</double></void>
</object></void>
<void method="put">
  <string>Vertex4</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.5399644760213144</double></void>
<void property="y">
  <double>0.11711711711711711</double></void>
</object></void>
<void method="put">
  <string>Vertex0</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.08695652173913043</double></void>
<void property="y">
  <double>0.10043668122270744</double></void>
</object></void>
<void method="put">
  <string>Vertex2</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.8206039076376554</double></void>
<void property="y">
  <double>0.36936936936936937</double></void>
</object></void>
<void method="put">
  <string>Vertex5</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.24253731343283583</double></void>
<void property="y">
  <double>0.096875</double></void>
</object></void>
<void method="put">
  <string>Vertex7</string>
<object class="dkfz.collections.graph.view.ViewVertex$Wrapper">
<void property="x">
  <double>0.5578358208955224</double></void>
<void property="y">
  <double>0.53125</double></void>
</object></void>
</object></viewvertexinfo>
<viewedgeinfo>
<object class="java.util.HashMap">
<void method="put">
  <string>Vertex0, Vertex1</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex4, Vertex7</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
<void property="painter">
<object class="dkfz.cello.genet.view.GenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
</object></void>
</object></void>
<void method="put">
  <string>Vertex1, Vertex5</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex2, Vertex2</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex7, Vertex6</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
<void property="painter">
<object class="dkfz.cello.genet.view.GenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
</object></void>
</object></void>
<void method="put">
  <string>Vertex5, Vertex0</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex7, Vertex4</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
<void property="painter">
<object class="dkfz.cello.genet.view.GenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
</object></void>
</object></void>
<void method="put">
  <string>Vertex6, Vertex7</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
<void property="painter">
<object class="dkfz.cello.genet.view.GenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
</object></void>
</object></void>
<void method="put">
  <string>Vertex6, Vertex6</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex4, Vertex6</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex4, Vertex4</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
<void method="put">
  <string>Vertex3, Vertex2</string>
<object class="dkfz.collections.graph.view.ViewEdge$Wrapper">
</object></void>
</object></viewedgeinfo>
<viewgraphinfo>
<object class="dkfz.collections.graph.view.ViewGraph$Wrapper">
<void property="edgepainter">
<object class="dkfz.cello.genet.view.StraightGenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
<void property="ShowThreshold">
  <boolean>true</boolean></void>
<void property="ShowLocation">
  <boolean>true</boolean></void>
</object></void>
<void property="vertexpainter">
<object class="dkfz.cello.genet.view.StraightGenePainter">
<void property="backColorValues">
<array class="int" length="3">
<void index="0">
  <int>255</int>
</void>
<void index="1">
  <int>255</int>
</void>
<void index="2">
  <int>255</int>
</void>
</array>
</void>
<void property="DisplayExactStrength">
  <boolean>false</boolean></void>
<void property="ShowThreshold">
  <boolean>true</boolean></void>
<void property="ShowLocation">
  <boolean>true</boolean></void>
</object></void>
<void property="width">
  <int>563</int></void>
<void property="height">
  <int>333</int></void>
</object></viewgraphinfo>
</graph>
<cells>
<object class="java.util.LinkedList">
<void method="add">
<object class="dkfz.cello.genet.RecordableCell">
<void property="Label">
  <string>L1</string></void>
<void property="GeneNames">
<array class="java.lang.String" length="8">
<void index="0">
  <string>CDK1</string>
</void>
<void index="1">
  <string>CDK2</string>
</void>
<void index="2">
  <string>CLV1</string>
</void>
<void index="3">
  <string>CLV2</string>
</void>
<void index="4">
  <string>CLV3</string>
</void>
<void index="5">
  <string>DIV</string>
</void>
<void index="6">
  <string>intWUS</string>
</void>
<void index="7">
  <string>WUS</string>
</void>
</array>
</void>
<void property="Axis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="OldAxis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Pos">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>20.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Radius">
  <double>7.0</double></void>
<void property="GeneState">
<array class="float" length="8">
<void index="0">
  <float>0.0</float>
</void>
<void index="1">
  <float>0.0</float>
</void>
<void index="2">
  <float>0.0</float>
</void>
<void index="3">
  <float>0.0</float>
</void>
<void index="4">
  <float>1.0</float>
</void>
<void index="5">
  <float>0.0</float>
</void>
<void index="6">
  <float>0.0</float>
</void>
<void index="7">
  <float>0.0</float>
</void>
</array>
</void>
</object></void>
<void method="add">
<object class="dkfz.cello.genet.RecordableCell">
<void property="Label">
  <string>L2</string></void>
<void property="GeneNames">
<array class="java.lang.String" length="8">
<void index="0">
  <string>CDK1</string>
</void>
<void index="1">
  <string>CDK2</string>
</void>
<void index="2">
  <string>CLV1</string>
</void>
<void index="3">
  <string>CLV2</string>
</void>
<void index="4">
  <string>CLV3</string>
</void>
<void index="5">
  <string>DIV</string>
</void>
<void index="6">
  <string>intWUS</string>
</void>
<void index="7">
  <string>WUS</string>
</void>
</array>
</void>
<void property="Axis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="OldAxis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Pos">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>10.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Radius">
  <double>7.0</double></void>
<void property="GeneState">
<array class="float" length="8">
<void index="0">
  <float>0.0</float>
</void>
<void index="1">
  <float>0.0</float>
</void>
<void index="2">
  <float>0.0</float>
</void>
<void index="3">
  <float>0.0</float>
</void>
<void index="4">
  <float>1.0</float>
</void>
<void index="5">
  <float>0.0</float>
</void>
<void index="6">
  <float>0.0</float>
</void>
<void index="7">
  <float>0.0</float>
</void>
</array>
</void>
</object></void>
<void method="add">
<object class="dkfz.cello.genet.RecordableCell">
<void property="Label">
  <string>L3</string></void>
<void property="GeneNames">
<array class="java.lang.String" length="8">
<void index="0">
  <string>CDK1</string>
</void>
<void index="1">
  <string>CDK2</string>
</void>
<void index="2">
  <string>CLV1</string>
</void>
<void index="3">
  <string>CLV2</string>
</void>
<void index="4">
  <string>CLV3</string>
</void>
<void index="5">
  <string>DIV</string>
</void>
<void index="6">
  <string>intWUS</string>
</void>
<void index="7">
  <string>WUS</string>
</void>
</array>
</void>
<void property="Axis">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>1.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="OldAxis">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>1.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Pos">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Radius">
  <double>7.0</double></void>
<void property="GeneState">
<array class="float" length="8">
<void index="0">
  <float>1.0</float>
</void>
<void index="1">
  <float>0.0</float>
</void>
<void index="2">
  <float>1.0</float>
</void>
<void index="3">
  <float>0.0</float>
</void>
<void index="4">
  <float>1.0</float>
</void>
<void index="5">
  <float>0.0</float>
</void>
<void index="6">
  <float>0.0</float>
</void>
<void index="7">
  <float>0.0</float>
</void>
</array>
</void>
</object></void>
<void method="add">
<object class="dkfz.cello.genet.RecordableCell">
<void property="Label">
  <string>OC</string></void>
<void property="GeneNames">
<array class="java.lang.String" length="8">
<void index="0">
  <string>CDK1</string>
</void>
<void index="1">
  <string>CDK2</string>
</void>
<void index="2">
  <string>CLV1</string>
</void>
<void index="3">
  <string>CLV2</string>
</void>
<void index="4">
  <string>CLV3</string>
</void>
<void index="5">
  <string>DIV</string>
</void>
<void index="6">
  <string>intWUS</string>
</void>
<void index="7">
  <string>WUS</string>
</void>
</array>
</void>
<void property="Axis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="OldAxis">
<array class="double" length="3">
<void index="0">
  <double>1.0</double>
</void>
<void index="1">
  <double>0.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Pos">
<array class="double" length="3">
<void index="0">
  <double>0.0</double>
</void>
<void index="1">
  <double>-10.0</double>
</void>
<void index="2">
  <double>0.0</double>
</void>
</array>
</void>
<void property="Radius">
  <double>7.0</double></void>
<void property="GeneState">
<array class="float" length="8">
<void index="0">
  <float>0.0</float>
</void>
<void index="1">
  <float>0.0</float>
</void>
<void index="2">
  <float>1.0</float>
</void>
<void index="3">
  <float>0.0</float>
</void>
<void index="4">
  <float>0.0</float>
</void>
<void index="5">
  <float>0.0</float>
</void>
<void index="6">
  <float>1.0</float>
</void>
<void index="7">
  <float>1.0</float>
</void>
</array>
</void>
</object></void>
</object></cells>
<netproperties>
<object class="dkfz.cello.genet.NetProperties">
<void property="Parameter">
<object class="dkfz.cello.genet.Parameter">
<void property="RatioStrings">
<array class="java.lang.String" length="0">
</array>
</void>
<void property="AngleStrings">
<array class="java.lang.String" length="0">
</array>
</void>
<void property="ControlDivision">
  <boolean>true</boolean></void>
<void property="DivisionString">
  <string>DIV</string></void>
<void property="RatioValues">
<array class="double" length="0">
</array>
</void>
<void property="AngleValues">
<array class="double" length="0">
</array>
</void>
</object></void>
<void property="Eggshell">
  <boolean>false</boolean></void>
<void property="ConsiderGeneLocation">
  <boolean>true</boolean></void>
<void property="GenesForColors">
<array class="java.lang.String" length="4">
<void index="0">
  <string>CLV3</string>
</void>
<void index="1">
  <string>CLV1</string>
</void>
<void index="2">
  <string>WUS</string>
</void>
<void index="3">
  <string>intWUS</string>
</void>
</array>
</void>
<void property="Sampling">
  <boolean>true</boolean></void>
</object></netproperties>
</geneomatic>
